Drought database research paper on different genes
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Abstract— Drought stress is a significant abiotic stress caused by
climate change, affecting ecosystems, agriculture, water
resources, and human well-being. DroughtWare is a web
application serving as a comprehensive gene database for drought
stress. It identified 346 genes in 167 gene families crucial for
drought tolerance. The database, utilizing Node.js, Express.js, and
MongoDB, provides detailed information on genes, including gene
name, crop name, accession number, role, and related sequences.
Through an intuitive interface, researchers can explore and
contribute to drought-related gene knowledge, aiding in the study
of drought tolerance mechanisms and crop improvement
strategies. DroughtWare fosters collaboration and access to
relevant genetic information in the field of drought research.
Keywords— Drought stress, DroughtWare database,
Drought tolerance genes, Node.js, Express.js, MongoDB,
Drought research collaboration.
I. INTRODUCTION
1.1 Drought Impact on Agricultural Production in Pakistan
Drought poses a serious threat to agricultural production in
Pakistan. Insufficient rainfall and reduced water availability
lead to crop failures and reduced yields. Agricultural-
dependent communities face economic losses and food security
challenges. Climate change exacerbates drought conditions,
making them more severe and unpredictable. Developing
drought-resistant cultivars and databases of stress-tolerant
genes are essential for mitigating the impact of drought on
agriculture.
1.2 Impact of Drought on Crop Production and Food
Security
Drought's impact on crop production is particularly severe
in arid and semi-arid regions like Balochistan and parts of
Sindh in Pakistan, where limited rainfall and water availability
lead to decreased agricultural productivity and food insecurity.
Climate change exacerbates this situation, making weather
patterns more unpredictable and contributing to more frequent
and severe droughts. Developing tropical nations, especially in
South Asia, are highly vulnerable to the effects of drought on
food availability and security. The global food supply faces
significant risks due to rising temperatures and diminishing
access to water resources. Crop yields are predicted to decline
substantially in the coming decades, necessitating a significant
increase in productivity to meet the demands of a growing
population. Addressing the challenges posed by drought on
crop production and food security requires the implementation
of effective drought alert systems, advanced crop breeding
techniques to develop drought-resistant cultivars, and
sustainable water management practices. Furthermore,
investment in research and databases focusing on drought-
tolerant genes and their regulation can play a crucial role in
developing resilient crops to ensure food security in drought-
prone regions.
1.3 Global Climate Change and Its Effect on Agriculture
Unpredictable and extreme weather events, such as
droughts, floods, heatwaves, and storms, disrupt farming
activities, leading to reduced crop yields and economic losses
for farmers. Increased temperatures and altered rainfall
patterns also affect plant growth and development, affecting
the timing of planting and harvesting seasons. Moreover,
climate change influences the prevalence and distribution of
pests and diseases, posing additional threats to agricultural
productivity. The changing climate can create favorable
conditions for pests and diseases to thrive, leading to crop
losses and increased reliance on pesticides. Adapting
agriculture to climate change is crucial to ensure food security
for a growing global population. Sustainable farming practices,
resilient crop varieties, efficient water management, and
investment in agricultural research and innovation are essential
steps to mitigate the impact of climate change on agriculture
and secure food supply for the future.
2. METHODS
2.1 Data collection
To develop the drought stress tolerance gene database, a
thorough literature search was conducted using academic
search engines like PubMed, Google Scholar, and Web of
Science. Specific keywords were utilized to identify
functionally characterized genes associated with drought
stress. The search yielded 346 genes from 167 gene families,
providing valuable insights for the DroughtWare database.
2.2 Data Arrangement:
The spreadsheet has created to organize and store the data of
the genes involved in drought stress tolerance. Detailed
2. information about these genes was identified, including gene
names, accession numbers, gene families, role of genes,
common names, botanical names, characterized in which crop,
references.
2.3 DroughtWare database
The DroughtWare database aims to streamline the process of
data entry, enable efficient searching and filtering based on
gene family and common names, and provide essential features
such as data editing, deletion, and pagination. To achieve these
objectives, the DroughtWare database leverages a client-server
architecture, with the server-side implemented using Node.js
and Express.js (Ojamaa et al., 2012) and the database managed
through MongoDB using Mongoose as the object modeling
tool. The front-end interface is developed using Handlebars as
the templating engine, ensuring a responsive design and
seamless integration of Bootstrap for enhanced styling
(Hoberman et al., 2014).
System Architecture
The DroughtWare database is designed as a web application
that provides a centralized and user-friendly platform for
managing gene data related to drought research. It serves as a
repository where researchers can store, retrieve, and analyze
gene data of different plant species to gain insights into drought
tolerance mechanisms. The architecture of the DroughtWare
database follows a client-server model, where the client
interacts with the server to perform various operations on the
gene data.
3.5.2 Client-Server Architecture
DroughtWare database uses a client-server architecture with
Handlebars for dynamic web pages on the front-end. Bootstrap
ensures a visually appealing user experience. Node.js serves as
the server platform with Express.js for efficient request
handling and routing. HTTP requests enable data retrieval,
entry, and updates.
3.5.3 Technologies and Frameworks Used
The development of the DroughtWare database leverages
several technologies and frameworks to ensure efficient and
reliable functionality:
Node.js
Node.js is the server-side runtime environment for
DroughtWare, enabling efficient handling of concurrent
requests with an event-driven, non-blocking I/O model. It
interacts with MongoDB to manage gene data and benefits
from a vast ecosystem of packages for seamless client-server
communication.
Express.js
Express.js is a minimalist web application framework built on
Node.js, simplifying server-side logic. It handles routing,
middleware, and request/response tasks in DroughtWare. Used
to define endpoints for user actions like registration, login,
gene data manipulation, and employs middleware for
authentication, authorization, and error handling.
MongoDB
Monogo DB is the NoSQL database used in DroughtWare for
its flexibility and scalability. Mongoose, an ODM library,
facilitates interaction with MongoDB, defining data models,
performing operations, and data validation. It supports schema
creation for gene data, including fields, types, and validation
rules, along with querying, indexing, and other database
operations.