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Multiscale Lung Texture Signature Learning
                        Using The Riesz Transform
Adrien Depeursinge¹, Antonio Foncubierta¹, Dimitri Van de Ville², Henning Müller¹
                                                             ¹University of Applied Sciences Western Switzerland, Sierre (HES-SO)
                                                               ²Ecole Polytechnique Fédérale de Lausanne, Switzerland (EPFL)
1. Introduction                                                                                                                                  3. Results
• The first step in medical image interpretation is to detect                                                                                    • Signatures from artificial textures
  abnormal image patterns and is related to visual perception.
• Visual perception strongly relies on texture properties, which
  are essential for the characterization of biomedical tissue.
  – Healthy and pathological lung parenchyma in high-resolution computed
    tomography (HRCT) from patients with interstitial lung diseases (ILD)
    can only be described in terms of texture properties:
                                                                                                                                                                                         Figure 4. Lower row: multiscale texture signatures 𝜞 𝒄 𝟖 of the upper row for 𝑵 = 𝟖.

                                                                                                                                                 – The first two columns on Fig. 4 demonstrate the scale covariance of the signatures.
                                                                                                                                                   The distributions of the weights 𝒘 for scales 𝑠1 , … , 𝑠4 are 0.1%, 18.5%, 81.1%, 0.3%
    healthy        emphysema              ground glass                 fibrosis       micronodules
                                                                                                                                                   and 2.3%, 3.9%, 14%, 79.8% , respectively.
• Computerized texture analysis is proposed to assist clinicians in                                                                              – Rotation covariance is demonstrated with oriented stripes in the 3rd and 4th columns
  image interpretation tasks.                                                                                                                      of Fig. 4.

2. Multiscale steerable Riesz filterbanks                                                                                                        • Lung texture signatures
• The components of the 𝑁th-order Riesz transform 𝓡 of a two-                                                                                                                    healthy               emphysema              ground glass              fibrosis                micronodules

  dimensional signal 𝑓(𝑥) are defined in the Fourier domain as:

               𝑛1 ,𝑛2                                    𝑛1 +𝑛2 −𝑗𝜔1 𝑛1 −𝑗𝜔2 𝑛2
        𝓡                  𝑓 𝝎 =                                                                                     𝑓 𝝎 ,                 (1)                                      𝟒                      𝟒                     𝟒                          𝟒                      𝟒
                                                         𝑛1 !𝑛2 !   𝝎 𝑛1 +𝑛2                                                                                                      𝜞 𝒉𝒆𝒂𝒍𝒕𝒉𝒚              𝜞 𝒆𝒎𝒑𝒉𝒚𝒔𝒆𝒎𝒂           𝜞 𝒈𝒓𝒐𝒖𝒏𝒅   𝒈𝒍𝒂𝒔𝒔          𝜞 𝒇𝒊𝒃𝒓𝒐𝒔𝒊𝒔              𝜞 𝒎𝒊𝒄𝒓𝒐𝒏𝒐𝒅𝒖𝒍𝒆𝒔


  for all combinations of (𝑛1 , 𝑛2 ) with 𝑛1 + 𝑛2 = 𝑁 and 𝑛1,2 ∈ ℕ.
• It yields steerable filterbanks when convolved with Gaussian
  kernels 𝐺:
               𝐺 ∗ 𝓡1,0              𝐺 ∗ 𝓡0,1                                     𝐺 ∗ 𝓡2,0                𝐺 ∗ 𝓡1,1             𝐺 ∗ 𝓡0,2
                                                                                                                                                                              3011 blocks,             407 blocks,            2226 blocks,            2962 blocks,              5988 blocks,
  𝑁=1                                                ,            𝑁=2                                                                      ,                                   7 patients.             6 patients.            32 patients.            37 patients.              16 patients.
                                                                                                                                                                        Figure 5. Distributions of the texture classes and visual appearance of the class-wise lung texture signatures 𝜞 𝒄 𝟒 .


                                        𝐺 ∗ 𝓡3,0             𝐺 ∗ 𝓡2,1             𝐺 ∗ 𝓡1,2                𝐺 ∗ 𝓡0,3                                         – The proposed methods are evaluated on 14,594 32x32 overlapping blocks from
                                                                                                                                                             manually drawn regions in 85 cases with a leave-one-patient-out cross-validation.
                        𝑁=3                                                                                                .
                                                                                                                                                           – Comparison with optimized state-of-the-art approaches:
                 Figure 1. Steerable filterbanks derived from the Riesz transform with 𝑵 = 𝟏, 𝟐, 𝟑.
                                                                                                                                                                        •    Local binary patterns (LBP): radius 𝑅 = 1,2 pixels and number of samples 𝑃 = 8,16.
                                                                                                                                                                        •    Grey-level co-occurrence matrices (GLCM) combined with run-length matrices (RLE):
• Multiscale filterbanks 𝑠1 , … , 𝑠4 are obtained by coupling the                                                                                                                                𝜋 𝜋 3𝜋
                                                                                                                                                                             orientations 𝜃 = 0, , , , distances 𝑑 = 1: 5 and grey-levels 𝑙 = 8, 16, 32.
                                                                                                                                                                                                          4 2      4
  Riesz transform with Simoncelli’s multi-resolution framework.                                                                                            – One versus all SVMs are used to learn the weights 𝒘 in Eq. (2).
                                                                                                                                                           – All approaches are combined with 22 grey-level histograms bins in −1050; 600
2. Texture signature learning                                                                                                                                Hounsfield Units.
                                                𝑁
• A texture signature 𝛤𝑐 of the class 𝑐 is built from a linear
                                                                                                                                                   True positive rate




  combination of the multiscale Riesz components as:                                                                                                                            healthy                 emphysema                ground glass                 fibrosis                 micronodules


   𝛤𝑐 𝑁 = 𝑤1 𝐺 ∗ 𝓡 𝑁,0                 𝑠1 + 𝑤2 𝐺 ∗ 𝓡 𝑁−1,1                   𝑠1 + ⋯ + 𝑤4𝑁+4 𝐺 ∗ 𝓡0,𝑁                                𝑠4 ,   (2)
                                                                                                                                                                            False positive rate        False positive rate      False positive rate      False positive rate          False positive rate
        Riesz
        filterbank
        (𝑁 = 8)
                                                                            ⋯                                                                                           Figure 6. Receiver operator characteristic (ROC) analysis for the various texture analysis approaches. 𝑵 = 𝟒 for all
                                                                                                                                                                        Riesz features. Area under ROC curves are shown in the subfigures.
                          𝑤1 = 2.9        𝑤2 = 1.7         𝑤3 = -0.8                   𝑤 𝑁−1 = -0.1           𝑤 𝑁 = -4.2

                                                                                                                                                           – The Riesz transform outperforms the other approaches for all classes but
                                                                                                                                                             emphysema 𝑝 < 10−19 .

                                                                            S
               texture to learn:

                                                                                                                                                 3. Conclusions and future work
                                                                                             associated
                                                                                             texture
                                                                                             signature                                           • Texture analysis enabling scale and rotation covariance with
                                                                                                                                                   infinitesimal precision is introduced.
                                                                                                                                                 • The learned signatures allows checking for the visual relevance of the
                                                                                                      𝑵                                            information modeled by the proposed approach.
                                 Figure 2. Construction of the texture signature                𝜞𝒄        .

                                                                                                                                                 • Future work will maximize the local orientation of the signatures for
• Support vector machines (SVM) are used to determine the
                                                                                                                                                   enhanced texture characterization.
  weights 𝒘 in Eq. (2) for a given texture discrimination task:
                                                                                                                                                 • The framework has already been extended to three dimensions:


                  versus                                                                                                      2.9
                                                                                                                           𝒘=
                                                                                                                              1.7
     texture                   texture



                                        Figure 3. Weight learning using SVMs.


                                                     Contact and more information: adrien.depeursinge@hevs.ch, http://medgift.hevs.ch/

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Multiscale Lung Texture Signature Learning Using The Riesz Transform

  • 1. Multiscale Lung Texture Signature Learning Using The Riesz Transform Adrien Depeursinge¹, Antonio Foncubierta¹, Dimitri Van de Ville², Henning Müller¹ ¹University of Applied Sciences Western Switzerland, Sierre (HES-SO) ²Ecole Polytechnique Fédérale de Lausanne, Switzerland (EPFL) 1. Introduction 3. Results • The first step in medical image interpretation is to detect • Signatures from artificial textures abnormal image patterns and is related to visual perception. • Visual perception strongly relies on texture properties, which are essential for the characterization of biomedical tissue. – Healthy and pathological lung parenchyma in high-resolution computed tomography (HRCT) from patients with interstitial lung diseases (ILD) can only be described in terms of texture properties: Figure 4. Lower row: multiscale texture signatures 𝜞 𝒄 𝟖 of the upper row for 𝑵 = 𝟖. – The first two columns on Fig. 4 demonstrate the scale covariance of the signatures. The distributions of the weights 𝒘 for scales 𝑠1 , … , 𝑠4 are 0.1%, 18.5%, 81.1%, 0.3% healthy emphysema ground glass fibrosis micronodules and 2.3%, 3.9%, 14%, 79.8% , respectively. • Computerized texture analysis is proposed to assist clinicians in – Rotation covariance is demonstrated with oriented stripes in the 3rd and 4th columns image interpretation tasks. of Fig. 4. 2. Multiscale steerable Riesz filterbanks • Lung texture signatures • The components of the 𝑁th-order Riesz transform 𝓡 of a two- healthy emphysema ground glass fibrosis micronodules dimensional signal 𝑓(𝑥) are defined in the Fourier domain as: 𝑛1 ,𝑛2 𝑛1 +𝑛2 −𝑗𝜔1 𝑛1 −𝑗𝜔2 𝑛2 𝓡 𝑓 𝝎 = 𝑓 𝝎 , (1) 𝟒 𝟒 𝟒 𝟒 𝟒 𝑛1 !𝑛2 ! 𝝎 𝑛1 +𝑛2 𝜞 𝒉𝒆𝒂𝒍𝒕𝒉𝒚 𝜞 𝒆𝒎𝒑𝒉𝒚𝒔𝒆𝒎𝒂 𝜞 𝒈𝒓𝒐𝒖𝒏𝒅 𝒈𝒍𝒂𝒔𝒔 𝜞 𝒇𝒊𝒃𝒓𝒐𝒔𝒊𝒔 𝜞 𝒎𝒊𝒄𝒓𝒐𝒏𝒐𝒅𝒖𝒍𝒆𝒔 for all combinations of (𝑛1 , 𝑛2 ) with 𝑛1 + 𝑛2 = 𝑁 and 𝑛1,2 ∈ ℕ. • It yields steerable filterbanks when convolved with Gaussian kernels 𝐺: 𝐺 ∗ 𝓡1,0 𝐺 ∗ 𝓡0,1 𝐺 ∗ 𝓡2,0 𝐺 ∗ 𝓡1,1 𝐺 ∗ 𝓡0,2 3011 blocks, 407 blocks, 2226 blocks, 2962 blocks, 5988 blocks, 𝑁=1 , 𝑁=2 , 7 patients. 6 patients. 32 patients. 37 patients. 16 patients. Figure 5. Distributions of the texture classes and visual appearance of the class-wise lung texture signatures 𝜞 𝒄 𝟒 . 𝐺 ∗ 𝓡3,0 𝐺 ∗ 𝓡2,1 𝐺 ∗ 𝓡1,2 𝐺 ∗ 𝓡0,3 – The proposed methods are evaluated on 14,594 32x32 overlapping blocks from manually drawn regions in 85 cases with a leave-one-patient-out cross-validation. 𝑁=3 . – Comparison with optimized state-of-the-art approaches: Figure 1. Steerable filterbanks derived from the Riesz transform with 𝑵 = 𝟏, 𝟐, 𝟑. • Local binary patterns (LBP): radius 𝑅 = 1,2 pixels and number of samples 𝑃 = 8,16. • Grey-level co-occurrence matrices (GLCM) combined with run-length matrices (RLE): • Multiscale filterbanks 𝑠1 , … , 𝑠4 are obtained by coupling the 𝜋 𝜋 3𝜋 orientations 𝜃 = 0, , , , distances 𝑑 = 1: 5 and grey-levels 𝑙 = 8, 16, 32. 4 2 4 Riesz transform with Simoncelli’s multi-resolution framework. – One versus all SVMs are used to learn the weights 𝒘 in Eq. (2). – All approaches are combined with 22 grey-level histograms bins in −1050; 600 2. Texture signature learning Hounsfield Units. 𝑁 • A texture signature 𝛤𝑐 of the class 𝑐 is built from a linear True positive rate combination of the multiscale Riesz components as: healthy emphysema ground glass fibrosis micronodules 𝛤𝑐 𝑁 = 𝑤1 𝐺 ∗ 𝓡 𝑁,0 𝑠1 + 𝑤2 𝐺 ∗ 𝓡 𝑁−1,1 𝑠1 + ⋯ + 𝑤4𝑁+4 𝐺 ∗ 𝓡0,𝑁 𝑠4 , (2) False positive rate False positive rate False positive rate False positive rate False positive rate Riesz filterbank (𝑁 = 8) ⋯ Figure 6. Receiver operator characteristic (ROC) analysis for the various texture analysis approaches. 𝑵 = 𝟒 for all Riesz features. Area under ROC curves are shown in the subfigures. 𝑤1 = 2.9 𝑤2 = 1.7 𝑤3 = -0.8 𝑤 𝑁−1 = -0.1 𝑤 𝑁 = -4.2 – The Riesz transform outperforms the other approaches for all classes but emphysema 𝑝 < 10−19 . S texture to learn: 3. Conclusions and future work associated texture signature • Texture analysis enabling scale and rotation covariance with infinitesimal precision is introduced. • The learned signatures allows checking for the visual relevance of the 𝑵 information modeled by the proposed approach. Figure 2. Construction of the texture signature 𝜞𝒄 . • Future work will maximize the local orientation of the signatures for • Support vector machines (SVM) are used to determine the enhanced texture characterization. weights 𝒘 in Eq. (2) for a given texture discrimination task: • The framework has already been extended to three dimensions: versus 2.9 𝒘= 1.7 texture texture Figure 3. Weight learning using SVMs. Contact and more information: adrien.depeursinge@hevs.ch, http://medgift.hevs.ch/