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Bioinformaticians rescue data
- 1. Bioinformaticians to the rescue Elena Sügis elena.sugis@.ut.ee
- 2. Have you ever thought of making the world a better place with computer science? http://www.scifiwright.com/2015/06/tomorrowland/
- 3. Slide credit: D.Fishman, Introduction to ML in bioinformatics Bioinformatics
- 5. How we do science lots of experiments v analysis Science knowledge hypothesis v v
- 6. The Wellcome Human Genome Library in London (Left CC: Russ London, Right Source: Wellcome Collection) What’s in the bookcase?
- 7. The Wellcome Human Genome Library in London (Left CC: Russ London, Right Source: Wellcome Collection) A single human genome ~3GB
- 8. Big Data
- 9. ATGCTCGTAC = 1mm Tallinn - Jõgeva - Misso: 320 km Slide image credit: P.Adler. Bioinformaatika, põnev väljakutse
- 11. Labs that produce data Research groups that can analyse data Labs that produce data Experts to analyse data Motivation
- 12. Labs that produce data Experts to analyse data Motivation Labs that produce data Research groups that can analyse data YOU?
- 13. Because Excel can’t help anymore
- 14. What kind of problems can we solve using bioinformatics?
- 15. Finding the right treatment Illustration by Zhou Tao (ShanghaiDaily.com)
- 16. VS
- 19. ACCTTGCTTACC Medical records Slide image credit: D.Fishman, ML in bioinformatics
- 21. How does The Perfect Bioinformatician look like?
- 22. Computer Science
- 26. Bioinformatics is a broad field Proteomics Black magic Machine learning Modeling Algorithms Sequences
- 27. Perks of being a bioinformatician
- 28. BIIT 2016BIIT 2016 MEM Working with smart colleagues
- 29. Learning something new everyday http://boingboing.net/2015/05/11/the-only-technique-to-learn-so.html
- 30. Travelling
- 31. You can make an impact http://www.scifiwright.com/2015/06/tomorrowland/
- 34. Genes are us… and them.SOURCE:,JAVIER,HERRERO,,EUROPEAN,MOLECULAR,BIOLOGY,LABORATORY— EUROPEAN,BIOINFORMAT,ICS,INSTITUTE Genes are us… and them.SOURCE:,JAVIER,HERRERO,,EUROPEAN,MOLECULAR,BIOLOGY,LABORATORY— EUROPEAN,BIOINFORMAT,ICS,INSTITUTE Genes are us… and them.SOURCE:,JAVIER,HERRERO,,EUROPEAN,MOLECULAR,BIOLOGY,LABORATORY— EUROPEAN,BIOINFORMAT,ICS,INSTITUTE
- 35. Genes are us… and them.SOURCE:,JAVIER,HERRERO,,EUROPEAN,MOLECULAR,BIOLOGY,LABORATORY— EUROPEAN,BIOINFORMAT,ICS,INSTITUTE Genes are us… and them.SOURCE:,JAVIER,HERRERO,,EUROPEAN,MOLECULAR,BIOLOGY,LABORATORY— EUROPEAN,BIOINFORMAT,ICS,INSTITUTE Genes are us… and them.SOURCE:,JAVIER,HERRERO,,EUROPEAN,MOLECULAR,BIOLOGY,LABORATORY— EUROPEAN,BIOINFORMAT,ICS,INSTITUTE Genes are us… and them.SOURCE:,JAVIER,HERRERO,,EUROPEAN,MOLECULAR,BIOLOGY,LABORATORY— EUROPEAN,BIOINFORMAT,ICS,INSTITUTE
- 36. Genes are us… and them.SOURCE:,JAVIER,HERRERO,,EUROPEAN,MOLECULAR,BIOLOGY,LABORATORY— EUROPEAN,BIOINFORMAT,ICS,INSTITUTE Genes are us… and them.SOURCE:,JAVIER,HERRERO,,EUROPEAN,MOLECULAR,BIOLOGY,LABORATORY— EUROPEAN,BIOINFORMAT,ICS,INSTITUTE Genes are us… and them.SOURCE:,JAVIER,HERRERO,,EUROPEAN,MOLECULAR,BIOLOGY,LABORATORY— EUROPEAN,BIOINFORMAT,ICS,INSTITUTE Genes are us… and them.SOURCE:,JAVIER,HERRERO,,EUROPEAN,MOLECULAR,BIOLOGY,LABORATORY— EUROPEAN,BIOINFORMAT,ICS,INSTITUTE Genes are us… and them.SOURCE:,JAVIER,HERRERO,,EUROPEAN,MOLECULAR,BIOLOGY,LABORATORY— EUROPEAN,BIOINFORMAT,ICS,INSTITUTE
- 37. Genes are us… and them.SOURCE:,JAVIER,HERRERO,,EUROPEAN,MOLECULAR,BIOLOGY,LABORATORY— EUROPEAN,BIOINFORMAT,ICS,INSTITUTE Genes are us… and them.SOURCE:,JAVIER,HERRERO,,EUROPEAN,MOLECULAR,BIOLOGY,LABORATORY— EUROPEAN,BIOINFORMAT,ICS,INSTITUTE Genes are us… and them.SOURCE:,JAVIER,HERRERO,,EUROPEAN,MOLECULAR,BIOLOGY,LABORATORY— EUROPEAN,BIOINFORMAT,ICS,INSTITUTE Genes are us… and them.SOURCE:,JAVIER,HERRERO,,EUROPEAN,MOLECULAR,BIOLOGY,LABORATORY— EUROPEAN,BIOINFORMAT,ICS,INSTITUTE Genes are us… and them.SOURCE:,JAVIER,HERRERO,,EUROPEAN,MOLECULAR,BIOLOGY,LABORATORY— EUROPEAN,BIOINFORMAT,ICS,INSTITUTE Genes are us… and them.SOURCE:,JAVIER,HERRERO,,EUROPEAN,MOLECULAR,BIOLOGY,LABORATORY— EUROPEAN,BIOINFORMAT,ICS,INSTITUTE
- 38. Genes are us… and them.SOURCE:,JAVIER,HERRERO,,EUROPEAN,MOLECULAR,BIOLOGY,LABORATORY— EUROPEAN,BIOINFORMAT,ICS,INSTITUTE Genes are us… and them.SOURCE:,JAVIER,HERRERO,,EUROPEAN,MOLECULAR,BIOLOGY,LABORATORY— EUROPEAN,BIOINFORMAT,ICS,INSTITUTE Genes are us… and them.SOURCE:,JAVIER,HERRERO,,EUROPEAN,MOLECULAR,BIOLOGY,LABORATORY— EUROPEAN,BIOINFORMAT,ICS,INSTITUTE Genes are us… and them.SOURCE:,JAVIER,HERRERO,,EUROPEAN,MOLECULAR,BIOLOGY,LABORATORY— EUROPEAN,BIOINFORMAT,ICS,INSTITUTE Genes are us… and them.SOURCE:,JAVIER,HERRERO,,EUROPEAN,MOLECULAR,BIOLOGY,LABORATORY— EUROPEAN,BIOINFORMAT,ICS,INSTITUTE Genes are us… and them.SOURCE:,JAVIER,HERRERO,,EUROPEAN,MOLECULAR,BIOLOGY,LABORATORY— EUROPEAN,BIOINFORMAT,ICS,INSTITUTE Genes are us… and them.SOURCE:,JAVIER,HERRERO,,EUROPEAN,MOLECULAR,BIOLOGY,LABORATORY— EUROPEAN,BIOINFORMAT,ICS,INSTITUTE
- 39. Genes are us… and them.SOURCE:,JAVIER,HERRERO,,EUROPEAN,MOLECULAR,BIOLOGY,LABORATORY— EUROPEAN,BIOINFORMAT,ICS,INSTITUTE Genes are us… and them.SOURCE:,JAVIER,HERRERO,,EUROPEAN,MOLECULAR,BIOLOGY,LABORATORY— EUROPEAN,BIOINFORMAT,ICS,INSTITUTE Genes are us… and them.SOURCE:,JAVIER,HERRERO,,EUROPEAN,MOLECULAR,BIOLOGY,LABORATORY— EUROPEAN,BIOINFORMAT,ICS,INSTITUTE Genes are us… and them.SOURCE:,JAVIER,HERRERO,,EUROPEAN,MOLECULAR,BIOLOGY,LABORATORY— EUROPEAN,BIOINFORMAT,ICS,INSTITUTE Genes are us… and them.SOURCE:,JAVIER,HERRERO,,EUROPEAN,MOLECULAR,BIOLOGY,LABORATORY— EUROPEAN,BIOINFORMAT,ICS,INSTITUTE Genes are us… and them.SOURCE:,JAVIER,HERRERO,,EUROPEAN,MOLECULAR,BIOLOGY,LABORATORY— EUROPEAN,BIOINFORMAT,ICS,INSTITUTE Genes are us… and them.SOURCE:,JAVIER,HERRERO,,EUROPEAN,MOLECULAR,BIOLOGY,LABORATORY— EUROPEAN,BIOINFORMAT,ICS,INSTITUTE Genes are us… and them.SOURCE:,JAVIER,HERRERO,,EUROPEAN,MOLECULAR,BIOLOGY,LABORATORY— EUROPEAN,BIOINFORMAT,ICS,INSTITUTE
- 40. Genes are us… and them.SOURCE:,JAVIER,HERRERO,,EUROPEAN,MOLECULAR,BIOLOGY,LABORATORY— EUROPEAN,BIOINFORMAT,ICS,INSTITUTE Genes are us… and them.SOURCE:,JAVIER,HERRERO,,EUROPEAN,MOLECULAR,BIOLOGY,LABORATORY— EUROPEAN,BIOINFORMAT,ICS,INSTITUTE Genes are us… and them.SOURCE:,JAVIER,HERRERO,,EUROPEAN,MOLECULAR,BIOLOGY,LABORATORY— EUROPEAN,BIOINFORMAT,ICS,INSTITUTE Genes are us… and them.SOURCE:,JAVIER,HERRERO,,EUROPEAN,MOLECULAR,BIOLOGY,LABORATORY— EUROPEAN,BIOINFORMAT,ICS,INSTITUTE Genes are us… and them.SOURCE:,JAVIER,HERRERO,,EUROPEAN,MOLECULAR,BIOLOGY,LABORATORY— EUROPEAN,BIOINFORMAT,ICS,INSTITUTE Genes are us… and them.SOURCE:,JAVIER,HERRERO,,EUROPEAN,MOLECULAR,BIOLOGY,LABORATORY— EUROPEAN,BIOINFORMAT,ICS,INSTITUTE Genes are us… and them.SOURCE:,JAVIER,HERRERO,,EUROPEAN,MOLECULAR,BIOLOGY,LABORATORY— EUROPEAN,BIOINFORMAT,ICS,INSTITUTE Genes are us… and them.SOURCE:,JAVIER,HERRERO,,EUROPEAN,MOLECULAR,BIOLOGY,LABORATORY— EUROPEAN,BIOINFORMAT,ICS,INSTITUTE Genes are us… and them.SOURCE:,JAVIER,HERRERO,,EUROPEAN,MOLECULAR,BIOLOGY,LABORATORY— EUROPEAN,BIOINFORMAT,ICS,INSTITUTE
- 41. Genes are us… and them.SOURCE:,JAVIER,HERRERO,,EUROPEAN,MOLECULAR,BIOLOGY,LABORATORY— EUROPEAN,BIOINFORMAT,ICS,INSTITUTE Genes are us… and them.SOURCE:,JAVIER,HERRERO,,EUROPEAN,MOLECULAR,BIOLOGY,LABORATORY— EUROPEAN,BIOINFORMAT,ICS,INSTITUTE Genes are us… and them.SOURCE:,JAVIER,HERRERO,,EUROPEAN,MOLECULAR,BIOLOGY,LABORATORY— EUROPEAN,BIOINFORMAT,ICS,INSTITUTE Genes are us… and them.SOURCE:,JAVIER,HERRERO,,EUROPEAN,MOLECULAR,BIOLOGY,LABORATORY— EUROPEAN,BIOINFORMAT,ICS,INSTITUTE Genes are us… and them.SOURCE:,JAVIER,HERRERO,,EUROPEAN,MOLECULAR,BIOLOGY,LABORATORY— EUROPEAN,BIOINFORMAT,ICS,INSTITUTE Genes are us… and them.SOURCE:,JAVIER,HERRERO,,EUROPEAN,MOLECULAR,BIOLOGY,LABORATORY— EUROPEAN,BIOINFORMAT,ICS,INSTITUTE Genes are us… and them.SOURCE:,JAVIER,HERRERO,,EUROPEAN,MOLECULAR,BIOLOGY,LABORATORY— EUROPEAN,BIOINFORMAT,ICS,INSTITUTE Genes are us… and them.SOURCE:,JAVIER,HERRERO,,EUROPEAN,MOLECULAR,BIOLOGY,LABORATORY— EUROPEAN,BIOINFORMAT,ICS,INSTITUTE Genes are us… and them.SOURCE:,JAVIER,HERRERO,,EUROPEAN,MOLECULAR,BIOLOGY,LABORATORY— EUROPEAN,BIOINFORMAT,ICS,INSTITUTE Genes are us… and them.SOURCE:,JAVIER,HERRERO,,EUROPEAN,MOLECULAR,BIOLOGY,LABORATORY— EUROPEAN,BIOINFORMAT,ICS,INSTITUTE
- 42. Genes are us… and them.SOURCE:,JAVIER,HERRERO,,EUROPEAN,MOLECULAR,BIOLOGY,LABORATORY— EUROPEAN,BIOINFORMAT,ICS,INSTITUTE Genes are us… and them.SOURCE:,JAVIER,HERRERO,,EUROPEAN,MOLECULAR,BIOLOGY,LABORATORY— EUROPEAN,BIOINFORMAT,ICS,INSTITUTE Genes are us… and them.SOURCE:,JAVIER,HERRERO,,EUROPEAN,MOLECULAR,BIOLOGY,LABORATORY— EUROPEAN,BIOINFORMAT,ICS,INSTITUTE Genes are us… and them.SOURCE:,JAVIER,HERRERO,,EUROPEAN,MOLECULAR,BIOLOGY,LABORATORY— EUROPEAN,BIOINFORMAT,ICS,INSTITUTE Genes are us… and them.SOURCE:,JAVIER,HERRERO,,EUROPEAN,MOLECULAR,BIOLOGY,LABORATORY— EUROPEAN,BIOINFORMAT,ICS,INSTITUTE Genes are us… and them.SOURCE:,JAVIER,HERRERO,,EUROPEAN,MOLECULAR,BIOLOGY,LABORATORY— EUROPEAN,BIOINFORMAT,ICS,INSTITUTE Genes are us… and them.SOURCE:,JAVIER,HERRERO,,EUROPEAN,MOLECULAR,BIOLOGY,LABORATORY— EUROPEAN,BIOINFORMAT,ICS,INSTITUTE Genes are us… and them.SOURCE:,JAVIER,HERRERO,,EUROPEAN,MOLECULAR,BIOLOGY,LABORATORY— EUROPEAN,BIOINFORMAT,ICS,INSTITUTE Genes are us… and them.SOURCE:,JAVIER,HERRERO,,EUROPEAN,MOLECULAR,BIOLOGY,LABORATORY— EUROPEAN,BIOINFORMAT,ICS,INSTITUTE Genes are us… and them.SOURCE:,JAVIER,HERRERO,,EUROPEAN,MOLECULAR,BIOLOGY,LABORATORY— EUROPEAN,BIOINFORMAT,ICS,INSTITUTE Genes are us… and them.SOURCE:,JAVIER,HERRERO,,EUROPEAN,MOLECULAR,BIOLOGY,LABORATORY— EUROPEAN,BIOINFORMAT,ICS,INSTITUTE
- 43. Genes are us… and them.SOURCE:,JAVIER,HERRERO,,EUROPEAN,MOLECULAR,BIOLOGY,LABORATORY— EUROPEAN,BIOINFORMAT,ICS,INSTITUTE Genes are us… and them.SOURCE:,JAVIER,HERRERO,,EUROPEAN,MOLECULAR,BIOLOGY,LABORATORY— EUROPEAN,BIOINFORMAT,ICS,INSTITUTE Genes are us… and them.SOURCE:,JAVIER,HERRERO,,EUROPEAN,MOLECULAR,BIOLOGY,LABORATORY— EUROPEAN,BIOINFORMAT,ICS,INSTITUTE Genes are us… and them.SOURCE:,JAVIER,HERRERO,,EUROPEAN,MOLECULAR,BIOLOGY,LABORATORY— EUROPEAN,BIOINFORMAT,ICS,INSTITUTE Genes are us… and them.SOURCE:,JAVIER,HERRERO,,EUROPEAN,MOLECULAR,BIOLOGY,LABORATORY— EUROPEAN,BIOINFORMAT,ICS,INSTITUTE Genes are us… and them.SOURCE:,JAVIER,HERRERO,,EUROPEAN,MOLECULAR,BIOLOGY,LABORATORY— EUROPEAN,BIOINFORMAT,ICS,INSTITUTE Genes are us… and them.SOURCE:,JAVIER,HERRERO,,EUROPEAN,MOLECULAR,BIOLOGY,LABORATORY— EUROPEAN,BIOINFORMAT,ICS,INSTITUTE Genes are us… and them.SOURCE:,JAVIER,HERRERO,,EUROPEAN,MOLECULAR,BIOLOGY,LABORATORY— EUROPEAN,BIOINFORMAT,ICS,INSTITUTE Genes are us… and them.SOURCE:,JAVIER,HERRERO,,EUROPEAN,MOLECULAR,BIOLOGY,LABORATORY— EUROPEAN,BIOINFORMAT,ICS,INSTITUTE Genes are us… and them.SOURCE:,JAVIER,HERRERO,,EUROPEAN,MOLECULAR,BIOLOGY,LABORATORY— EUROPEAN,BIOINFORMAT,ICS,INSTITUTE Genes are us… and them.SOURCE:,JAVIER,HERRERO,,EUROPEAN,MOLECULAR,BIOLOGY,LABORATORY— EUROPEAN,BIOINFORMAT,ICS,INSTITUTE Genes are us… and them.SOURCE:,JAVIER,HERRERO,,EUROPEAN,MOLECULAR,BIOLOGY,LABORATORY— EUROPEAN,BIOINFORMAT,ICS,INSTITUTE
- 44. Genes are us… and them.SOURCE:,JAVIER,HERRERO,,EUROPEAN,MOLECULAR,BIOLOGY,LABORATORY— EUROPEAN,BIOINFORMAT,ICS,INSTITUTE Genes are us… and them.SOURCE:,JAVIER,HERRERO,,EUROPEAN,MOLECULAR,BIOLOGY,LABORATORY— EUROPEAN,BIOINFORMAT,ICS,INSTITUTE Genes are us… and them.SOURCE:,JAVIER,HERRERO,,EUROPEAN,MOLECULAR,BIOLOGY,LABORATORY— EUROPEAN,BIOINFORMAT,ICS,INSTITUTE Genes are us… and them.SOURCE:,JAVIER,HERRERO,,EUROPEAN,MOLECULAR,BIOLOGY,LABORATORY— EUROPEAN,BIOINFORMAT,ICS,INSTITUTE Genes are us… and them.SOURCE:,JAVIER,HERRERO,,EUROPEAN,MOLECULAR,BIOLOGY,LABORATORY— EUROPEAN,BIOINFORMAT,ICS,INSTITUTE Genes are us… and them.SOURCE:,JAVIER,HERRERO,,EUROPEAN,MOLECULAR,BIOLOGY,LABORATORY— EUROPEAN,BIOINFORMAT,ICS,INSTITUTE Genes are us… and them.SOURCE:,JAVIER,HERRERO,,EUROPEAN,MOLECULAR,BIOLOGY,LABORATORY— EUROPEAN,BIOINFORMAT,ICS,INSTITUTE Genes are us… and them.SOURCE:,JAVIER,HERRERO,,EUROPEAN,MOLECULAR,BIOLOGY,LABORATORY— EUROPEAN,BIOINFORMAT,ICS,INSTITUTE Genes are us… and them.SOURCE:,JAVIER,HERRERO,,EUROPEAN,MOLECULAR,BIOLOGY,LABORATORY— EUROPEAN,BIOINFORMAT,ICS,INSTITUTE Genes are us… and them.SOURCE:,JAVIER,HERRERO,,EUROPEAN,MOLECULAR,BIOLOGY,LABORATORY— EUROPEAN,BIOINFORMAT,ICS,INSTITUTE Genes are us… and them.SOURCE:,JAVIER,HERRERO,,EUROPEAN,MOLECULAR,BIOLOGY,LABORATORY— EUROPEAN,BIOINFORMAT,ICS,INSTITUTE Genes are us… and them.SOURCE:,JAVIER,HERRERO,,EUROPEAN,MOLECULAR,BIOLOGY,LABORATORY— EUROPEAN,BIOINFORMAT,ICS,INSTITUTE Genes are us… and them.SOURCE:,JAVIER,HERRERO,,EUROPEAN,MOLECULAR,BIOLOGY,LABORATORY— EUROPEAN,BIOINFORMAT,ICS,INSTITUTE
- 46. Illustration by Mari-Liis Allikivi